The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1968
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 413604
End posion on genome 413677
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttctaatcat
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGTAGAGCATCTGGCTTTTAACCAGGTGGTCAGGGGTTCGAA
CCCCCTCGGGCCCGctc
Downstream region at tRNA end position 
acgcgtggtg
Secondary structure (Cloverleaf model)
>At1968	Lys	TTT
                   t      Gctc acgcgtggtg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          C A
                    T     T C C C C     A
      C G A        A      | | | | |     G
    C       C T C G       A G G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        A     TGGTC
                    T + G
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    T T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCAGGTAGAGCATCTGGCTTTTAACCAGGTGGTCAGGGGTTCGAA
CCCCCTCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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