The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1969
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 669964
End posion on genome 670048
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
tctctgatgc
tRNA gene sequence 
GCGGAGGTTGTCGAGACTGGCCAAAGGCGATGGATTCAGGGTCCATTCCCGAAGGGGTTC
GAGGGTTCAAATCCCTCCCTCCGCActg
Downstream region at tRNA end position 
gcatttttaa
Secondary structure (Cloverleaf model)
>At1969	Leu	CAG
                   c      Actg gcatttttaa
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
    C A G A        T      | | | | |     A
  T         G C T G       G A G G G     C
  G           | + |                 T T
  G         A G G C
    C C A A        G     TCCCGAAGGGGTTC
                    A - T
                    T - A
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGGTTGTCGAGACTGGCCAAAGGCGATGGATTCAGGGTCCATTCCCGAAGGGGTTC
GAGGGTTCAAATCCCTCCCTCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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