The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1970
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 826046
End posion on genome 826118
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
cggtcttagt
tRNA gene sequence 
GCCGCTGTAGCTCAGTTGGTAGAGCACTCGGCTGTTAACCGAGCGGTCATCGGTTCGAGA
CCGATCAGCGGCGtgg
Downstream region at tRNA end position 
ggatgtagct
Secondary structure (Cloverleaf model)
>At1970	Asn	GTT
                   t      Gtgg ggatgtagct
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     T - A
                     G - C          A G
                    T     T A G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A T C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     CGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCTGTAGCTCAGTTGGTAGAGCACTCGGCTGTTAACCGAGCGGTCATCGGTTCGAGA
CCGATCAGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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