The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1972
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 845602
End posion on genome 845674
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
gggaaattat
tRNA gene sequence 
GCCCCGGTAGTGTAGTGGCCTATCATACAGGCCTGTCGAGCCTGTGACATGGGTTCAAAT
CCCGTCCGGGGCGtcc
Downstream region at tRNA end position 
gaataaaagt
Secondary structure (Cloverleaf model)
>At1972	Asp	GTC
                   t      Gtcc gaataaaagt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     T G C C C     A
      T G A        A      | + | | |     A
    G       T G T G       A T G G G     C
    G         | | +                 T T
    C       T C A T
      C T A        A     TGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGTGTAGTGGCCTATCATACAGGCCTGTCGAGCCTGTGACATGGGTTCAAAT
CCCGTCCGGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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