The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1974
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 960858
End posion on genome 960930
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
cctgatctat
tRNA gene sequence 
GCCACTGTAGCTCAGTAGGTAGAGCAGCTGATTCGTAATCAGCAGGTCGGGGGATCGATG
CCCTCCAGTGGCTctt
Downstream region at tRNA end position 
ctacaaaaca
Secondary structure (Cloverleaf model)
>At1974	Thr	CGT
                   t      Tctt ctacaaaaca
                     G - C
                     C - G
                     C - G
                     A - T
                     C - G
                     T - A
                     G - C          G T
                    T     C T C C C     A
      T G A        A      | + | | |     G
    A       C T C G       G G G G G     C
    G       | | | |                 A T
    G       G A G C
      T A          A     AGGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCACTGTAGCTCAGTAGGTAGAGCAGCTGATTCGTAATCAGCAGGTCGGGGGATCGATG
CCCTCCAGTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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