The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1975
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1008253
End posion on genome 1008337
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position
cgaacatcat
tRNA gene sequence
GCAGAGGTTGCCGAGTCAGGTCAAAGGCGGCAGACTCAAGATCTGCCTCCGTAGGGATTC
GCCGGTTCGAATCCGGCCCTCTGCAttc
Downstream region at tRNA end position
aggaggtatg
Secondary structure (Cloverleaf model)
>At1975	Leu	CAA
                   t      Attc aggaggtatg
                     G - C
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C G G C C     A
    C T G A        T      | | | | |     G
  A         G C C G       G C C G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     CTCCGTAGGGATTC
                    G - C
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGAGGTTGCCGAGTCAGGTCAAAGGCGGCAGACTCAAGATCTGCCTCCGTAGGGATTC
GCCGGTTCGAATCCGGCCCTCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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