The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1976
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1054826
End posion on genome 1054897
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
tttcgcaatg
tRNA gene sequence 
GCCGGGGTGGGGTAGTGGATATCCTTGGGGACTGTGGATCCCCGGACCCGGGTTCGATTC
CCGGTCCCGGCCctt
Downstream region at tRNA end position 
ctttgtgcct
Secondary structure (Cloverleaf model)
>At1976	His	GTG
                   g      Cctt ctttgtgcct
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          T T
                    T     G G C C C     A
      T G A        G      | | | | |     G
    G       T G G G       C C G G G     C
    G         | | +                 T T
    A       T C C T
      T A          T     GGAC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGGGTAGTGGATATCCTTGGGGACTGTGGATCCCCGGACCCGGGTTCGATTC
CCGGTCCCGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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