The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1977
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1136563
End posion on genome 1136647
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
tagatgcaaa
tRNA gene sequence 
GCGGAAGTAGTGTAGTCTGGCATCACAGGAGCTTCCCAAGCTCCTAACCCGGGTTCAAAT
CCCGGCTTCCGCAtgc
Downstream region at tRNA end position 
aaggatttgt
Secondary structure (Cloverleaf model)
>At1977	Gly	CCC
                   a      Atgc aaggatttgt
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C          T A
                    T     G G C C C     A
      T G A        A      | | | | |     A
    C       T G T G       C C G G G     C
    T         | | |                 T T
    G       T C A C
      G C A        A     TAAC
                    G - C
                    G - C
                    A - T
                    G - C
                    C - G
                  T       A
                  T       A *
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAAGTAGTGTAGTCTGGCATCACAGGAGCTTCCCAagcttcggaaaaAGCTCCTAAC
CCGGGTTCAAATCCCGGCTTCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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