The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1980
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1340143
End posion on genome 1340223
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
accaattttt
tRNA gene sequence 
GCCGCGGTGGCCCAGCGGTACGGCGCCAGCCTTGAGAGCTGGTTCCCTTGTGGATCGGGA
GTTCGAATCTCCCCCGCGGCGcct
Downstream region at tRNA end position 
ttcgaatcat
Secondary structure (Cloverleaf model)
>At1980	Ser	TGA
                   t      Gcct ttcgaatcat
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     C C C T C     A
        G A        G      | | | | |     G
      C     C C C G       G G G A G     C
      G       | | |                 T T
      G     C G G C
        T A        G     TTCCCTTGTGGATC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTGGCCCAGCGGTACGGCGCCAGCCTTGAGAGCTGGTTCCCTTGTGGATCGGGA
GTTCGAATCTCCCCCGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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