The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1981
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1349852
End posion on genome 1349924
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
caggcgttat
tRNA gene sequence 
GGGGCCGTGGGGTAGCTTGGTATCCTACGGGCTTTGGGAGCCTGAGACTCCGGTCCAAAT
CCGGACGGCCCCAtac
Downstream region at tRNA end position 
tgcgatcaca
Secondary structure (Cloverleaf model)
>At1981	Pro	TGG
                   t      Atac tgcgatcaca
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     A G G C C     A
      C G A        G      | | | | |     A
    T       T G G G       T C C G G     C
    T         | | +                 T C
    G       T C C T
      G T A        A     AGAC
                    C - G
                    G + T
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTGGGGTAGCTTGGTATCCTACGGGCTTTGGGAGCCTGAGACTCCGGTCCAAAT
CCGGACGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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