The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1982
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1402849
End posion on genome 1402924
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position
ataaggagta
tRNA gene sequence
GGGCCCGTAGTGTAAACGGATATCACAGGGGCCTCCGGAGCCCCTAATCCGGGTTCGATT
CCCGGCGGGCCCGCCA
Downstream region at tRNA end position
ttcacagatc
Secondary structure (Cloverleaf model)
>At1982	Arg	CCG
                   a      GCCA ttcacagatc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T T
                    T     G G C C C     A
      A A A        A      | | | | |     G
    C       T G T G       C C G G G     C
    G         | | |                 T T
    G       T C A C
      A T A        A     TAAT
                    G - C
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTGTAAACGGATATCACAGGGGCCTCCGGAGCCCCTAATCCGGGTTCGATT
CCCGGCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK