The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1984
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1504910
End posion on genome 1504981
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ccttaatcag
tRNA gene sequence 
GGGCCGGTAGATCAGCGGTAGATCGCCTGCTTTGCAAGCAGGAGGCCTCGGGTTCAAACC
CCGACCGGTCCActa
Downstream region at tRNA end position 
gtttttattt
Secondary structure (Cloverleaf model)
>At1984	Ala	TGC
                   g      Acta gtttttattt
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          C A
                    T     A G C C C     A
        G A        A      | | | | |     A
      C     C T A G       T C G G G     C
      G     | | | |                 T T
      G     G A T C
        T A        G     AGGCC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGATCAGCGGTAGATCGCCTGCTTTGCAAGCAGGAGGCCTCGGGTTCAAACC
CCGACCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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