The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1988
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 148300
End posion on genome 148226
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position
ttccctcaaa
tRNA gene sequence
GCTCCGGTGGTGTAGTCCGGCCAAGCATTAGGGACTCTCAATCCCCCGACTCGGGTCCAA
ATCCCGACCGGAGCAtag
Downstream region at tRNA end position
aatacaaata
Secondary structure (Cloverleaf model)
>At1988	Glu	CTC
                   a      Atag aatacaaata
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     A G C C C     A
    C T G A        G      | | | | |     A
  C         T G T G       T C G G G     C
  G         + | | +                 T C
  G         G C A T
    C C A A        T     CGAC
                    A   C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTGGTGTAGTCCGGCCAAGCATTAGGGACTCTCAATCCCCCGACTCGGGTCCAA
ATCCCGACCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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