The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1990
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 341284
End posion on genome 341210
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position
acggagctgc
tRNA gene sequence
GGGGTTGTAGCTTAGACAGGCTATAGCACTCGGCTGATAACCGAGAGGTCACCGGTTCGA
ATCCGGTCAACCCCAtct
Downstream region at tRNA end position
gtgtgagcta
Secondary structure (Cloverleaf model)
>At1990	Ile	GAT
                   c      Atct gtgtgagcta
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C          T A
                    T     T G G C C     A
    C A G A        A      | | | | |     G
  A         T T C G       A C C G G     C
  G           | | |                 T T
  G         T A G C
    C T A          A     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTTGTAGCTTAGACAGGCTATAGCACTCGGCTGATAACCGAGAGGTCACCGGTTCGA
ATCCGGTCAACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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