The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1991
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 352925
End posion on genome 352853
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
ttgcttttct
tRNA gene sequence 
GCAGGTGTGGTGTAGCCTGGTAGCACGAGAGCCTTCCAAGCTTTCGACTCGGGTCCAAAT
CCCGACACCTGCAtca
Downstream region at tRNA end position 
ctgctgatat
Secondary structure (Cloverleaf model)
>At1991	Gly	TCC
                   t      Atca ctgctgatat
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     T - A
                     G - C          T A
                    T     A G C C C     A
      C G A        G      | | | | |     A
    C       T G T G       T C G G G     C
    T       + | | |                 T C
    G       G C A C
      G T A        G     CGAC
                    A - T
                    G + T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGTGTGGTGTAGCCTGGTAGCACGAGAGCCTTCCAAGCTTTCGACTCGGGTCCAAAT
CCCGACACCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK