The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1993
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 459164
End posion on genome 459092
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
attttcgtga
tRNA gene sequence 
GGGGCCGTGGGGTAGCTTGGTATCCTGCCAGCTTGGGGTGCTGGTGACTTGAGTTCAATT
CTCAACGGCCCCAtac
Downstream region at tRNA end position 
cttttattta
Secondary structure (Cloverleaf model)
>At1993	Pro	GGG
                   a      Atac cttttattta
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T T
                    T     A A C T C     A
      C G A        G      | | | | |     A
    T       T G G G       T T G A G     C
    T         | | +                 T T
    G       T C C T
      G T A        G     TGAC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  T       T
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTGGGGTAGCTTGGTATCCTGCCAGCTTGGGGTGCTGGTGACTTGAGTTCAATT
CTCAACGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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