The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1994
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 562317
End posion on genome 562220
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
tactgcctat
tRNA gene sequence 
CCCGGCTTAGCTCAGTTGGTAGAGCGGCGGACTGTAGATCCGCAGGTCTCTGGTTCGAAT
CCGGAAGCCGGGAtcc
Downstream region at tRNA end position 
attcttgttt
Secondary structure (Cloverleaf model)
>At1994	Tyr	GTA
                   t      Atcc attcttgttt
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     C - G
                     T - A          T A
                    T     A G G C C     A
      T G A        A      | | + | |     G
    T       C T C G       T C T G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGGCTTAGCTCAGTTGGTAGAGCGGCGGACTGTAGagagttcaacggtgaattcgccg
taATCCGCAGGTCTCTGGTTCGAATCCGGAAGCCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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