The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1995
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 563108
End posion on genome 563036
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
agaggcggct
tRNA gene sequence 
GGGGCCGTGGGGTAGCCTGGTATCCTTCCAGCTTCGGGAGCTGGAAACTCCGGTCCAAAT
CCGGACGGCCCCActt
Downstream region at tRNA end position 
gattctggaa
Secondary structure (Cloverleaf model)
>At1995	Pro	CGG
                   t      Actt gattctggaa
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     A G G C C     A
      C G A        G      | | | | |     A
    C       T G G G       T C C G G     C
    T         | | +                 T C
    G       T C C T
      G T A        T     AAAC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  T       A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTGGGGTAGCCTGGTATCCTTCCAGCTTCGGGAGCTGGAAACTCCGGTCCAAAT
CCGGACGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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