The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1996
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 656418
End posion on genome 656334
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
tatgacaaaa
tRNA gene sequence 
GCGGAGGTTGTCGAGACTGGCCAAAGGCGATGGATTTAGGGTCCATTCCCGAAGGGGTTC
GAGGGTTCAAATCCCTCCCTCCGCAcac
Downstream region at tRNA end position 
ttctattgtc
Secondary structure (Cloverleaf model)
>At1996	Leu	TAG
                   a      Acac ttctattgtc
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
    C A G A        T      | | | | |     A
  T         G C T G       G A G G G     C
  G           | + |                 T T
  G         A G G C
    C C A A        G     TCCCGAAGGGGTTC
                    A - T
                    T - A
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGGTTGTCGAGACTGGCCAAAGGCGATGGATTTAGGGTCCATTCCCGAAGGGGTTC
GAGGGTTCAAATCCCTCCCTCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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