The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1997
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 986328
End posion on genome 986244
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tagcggaaac
tRNA gene sequence 
GCGAGGGTAACTAAGCCAGGCCAACAGTGCAGGACTTAAGATCCTGTCCCGAAGGGGTTC
GCGGGTTCAAATCCCGCCCCTCGCAtct
Downstream region at tRNA end position 
tcacgtacaa
Secondary structure (Cloverleaf model)
>At1997	Leu	TAA
                   c      Atct tcacgtacaa
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    C C G A        A      | | | | |     A
  A         A T C A       G C G G G     C
  G           | | |                 T T
  G         C A G T
    C C A A        G     TCCCGAAGGGGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTAACTAAGCCAGGCCAACAGTGCAGGACTTAAGATCCTGTCCCGAAGGGGTTC
GCGGGTTCAAATCCCGCCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK