The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1998
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 996371
End posion on genome 996290
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tgaataaagg
tRNA gene sequence 
GCGGGGATGGCCCAGAGGTAAGGCGGCAGCCTGCTAAGCTGTTTCTCTTATGAGAGCGTG
GGTTCGAATCCCACTCCCCGCGttt
Downstream region at tRNA end position 
catagaacgg
Secondary structure (Cloverleaf model)
>At1998	Ser	GCT
                   g      Gttt catagaacgg
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C A C C C     A
        G A        G      | | | | |     G
      A     C C C G       G T G G G     C
      G       | | |                 T T
      G     A G G C
        T A        G     TTCTCTTATGAGAGC
                    G + T
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGATGGCCCAGAGGTAAGGCGGCAGCCTGCTAAGCTGTTTCTCTTATGAGAGCGTG
GGTTCGAATCCCACTCCCCGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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