The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1999
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1079396
End posion on genome 1079324
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
tcctatcttt
tRNA gene sequence 
GCCGTCGTAGCTCAGCCTGGTAGAGCGCGTGCTTGGTAAGCACGAGTCGCGGGTCCAAAC
CCCGTCGGCGGCTtta
Downstream region at tRNA end position 
tttcatccgt
Secondary structure (Cloverleaf model)
>At1999	Thr	GGT
                   t      Ttta tttcatccgt
                     G - C
                     C - G
                     C - G
                     G - C
                     T + G
                     C - G
                     G - C          C A
                    T     T G C C C     A
      C G A        A      + | | | |     A
    C       C T C G       G C G G G     C
    T       | | | |                 T C
    G       G A G C
      G T A        G     AGTC
                    C - G
                    G - C
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTCGTAGCTCAGCCTGGTAGAGCGCGTGCTTGGTAAGCACGAGTCGCGGGTCCAAAC
CCCGTCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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