The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2001
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1168574
End posion on genome 1168500
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position
cactcttgtc
tRNA gene sequence
GCTCCGGTGGTGTAGTCCGGACAAGCATATCGGCCTTTCGAGCCGACGACCTGGGTCCAA
ATCCCGGCCGGAGCAttt
Downstream region at tRNA end position
aatcgtttat
Secondary structure (Cloverleaf model)
>At2001	Glu	TTC
                   c      Attt aatcgtttat
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      | + | | |     A
  C         T G T G       C T G G G     C
  G         + | | +                 T C
  G         G C A T
    A C A A        A     CGAC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTGGTGTAGTCCGGACAAGCATATCGGCCTTTCGAGCCGACGACCTGGGTCCAA
ATCCCGGCCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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