The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2002
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1192997
End posion on genome 1192926
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ccgttaatgc
tRNA gene sequence 
GGATAGGTGGCAGAGAGGTCATGCGTGGGACTGCAGATCCCATCTACTAGGGTTCGAATC
CCTACCTATCCTcta
Downstream region at tRNA end position 
ccaattttga
Secondary structure (Cloverleaf model)
>At2002	Cys	GCA
                   c      Tcta ccaattttga
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T
                     G - C
                     G - C          T A
                    T     A T C C C     A
        G A        G      | | | | |     G
      A     G A C G       T A G G G     C
      G       | | |                 T T
      G     A T G C
        T C        G     TCTAC
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGATAGGTGGCAGAGAGGTCATGCGTGGGACTGCAGATCCCATCTACTAGGGTTCGAATC
CCTACCTATCCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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