The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2003
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1259685
End posion on genome 1259612
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
taccgagaat
tRNA gene sequence 
GCCCGAGTGGGGTAATTTGGATATCCTGGAGGCCTGCGGAGCCTCAGATCCGGGTTCAAA
TCCCGGCCCGGGCAtta
Downstream region at tRNA end position 
tggcagaaac
Secondary structure (Cloverleaf model)
>At2003	Arg	GCG
                   t      Atta tggcagaaac
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     A   C
                     G - C          T A
                    T     G G C C C     A
    T T A A        G      | | | | |     A
  T         T G G G       C C G G G     C
  G           | | +                 T T
  G         T C C T
    A T A          G     AGAT
                    G - C
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGAGTGGGGTAATTTGGATATCCTGGAGGCCTGCGGAGCCTCAGATCCGGGTTCAAA
TCCCGGCCCGGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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