The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2004
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1327651
End posion on genome 1327579
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
caccacccgc
tRNA gene sequence 
AGCCCTGTGGTGTAGTGGCCAAGCATTATGGGCTCTGGACCCATCGACGGCAGTTCGAAT
CTGCCCAGGGCTAttt
Downstream region at tRNA end position 
gattaaatta
Secondary structure (Cloverleaf model)
>At2004	Gln	CTG
                   c      Attt gattaaatta
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A
                     G - C          T A
                    T     C C G T C     A
      T G A        G      | | | | |     G
    G       T G T G       G G C A G     C
    G       + | | +                 T T
    C       G C A T
      C A A        T     CGAC
                    A - T
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCTGTGGTGTAGTGGCCAAGCATTATGGGCTCTGGACCCATCGACGGCAGTTCGAAT
CTGCCCAGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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