The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2005
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1389031
End posion on genome 1388959
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
accgaagaga
tRNA gene sequence 
GGGCTTGTGGTCCAGTGGCTACGACGTCTCCCTCACACGGAGAAGATCGCCGGTTCAAAT
CCGGCCAGGCCCAttg
Downstream region at tRNA end position 
tatacgtggg
Secondary structure (Cloverleaf model)
>At2005	Val	CAC
                   a      Attg tatacgtggg
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     T - A
                     G - C          T A
                    T     C G G C C     A
      T G A        G      | | | | |     A
    G       C C T G       G C C G G     C
    G         | | |                 T T
    C       C G A C
      T A          G     AGATC
                    T - A
                    C - G
                    T - A
                    C - G
                    C - G
                  C       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTTGTGGTCCAGTGGCTACGACGTCTCCCTCACACGGAGAAGATCGCCGGTTCAAAT
CCGGCCAGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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