The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2007
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1451378
End posion on genome 1451307
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
aggtttagaa
tRNA gene sequence 
GGGCCGGTAGATCAGAGGTAGATCGCTTCCTTGGCATGGAAGAGGCCAGGGGTTCAAATC
CCCTCCGGTCCAtta
Downstream region at tRNA end position 
tggattaagc
Secondary structure (Cloverleaf model)
>At2007	Ala	GGC
                   a      Atta tggattaagc
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     T C C C C     A
        G A        A      | | | | |     A
      A     C T A G       A G G G G     C
      G     | | | |                 T T
      G     G A T C
        T A        G     AGGCC
                    C - G
                    T - A
                    T - A
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGATCAGAGGTAGATCGCTTCCTTGGCATGGAAGAGGCCAGGGGTTCAAATC
CCCTCCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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