The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2008
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1477335
End posion on genome 1477253
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
ttccttgtga
tRNA gene sequence 
GTCGGGGTAGCCTAGCCCGGTAAGGCGGTAGACTCGAGATCTACTGCTCTCGTAGCTCGG
GAGTTCAAATCTCCCCCCCGACGctt
Downstream region at tRNA end position 
gcgtgagatt
Secondary structure (Cloverleaf model)
>At2008	Ser	CGA
                   a      Gctt gcgtgagatt
                     G - C
                     T - A
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C C C T C     A
      C G A        A      | | | | |     A
    C       T C C G       G G G A G     C
    C       | | | |                 T T
    G       A G G C
      G T A        G     TGCTCTCGTAGCTC
                    G - C
                    T - A
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCGGGGTAGCCTAGCCCGGTAAGGCGGTAGACTCGAGATCTACTGCTCTCGTAGCTCGG
GAGTTCAAATCTCCCCCCCGACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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