The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2009
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 1496575
End posion on genome 1496503
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
agtttctgga
tRNA gene sequence 
GCCGTGGTAGCTCAGTTGGGAGAGCGCCAGACTGAAGATCTGGAGGTCGCTGGTTCGATC
CCGGCCCACGGCAtac
Downstream region at tRNA end position 
ttccaaaatt
Secondary structure (Cloverleaf model)
>At2009	Phe	GAA
                   a      Atac ttccaaaatt
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A
                     G - C
                     G - C          C T
                    T     C G G C C     A
      T G A        A      | | + | |     G
    T       C T C G       G C T G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTGGTAGCTCAGTTGGGAGAGCGCCAGACTGAAGATCTGGAGGTCGCTGGTTCGATC
CCGGCCCACGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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