The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2010
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 143286
End posion on genome 143357
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
acaatacgca
tRNA gene sequence 
GGGCCGGTAGATCAGCGGTAGATCGCCTGCTTTGCAAGCAGGAGGCCTCGGGTTCAAACC
CCGACCGGTCCActa
Downstream region at tRNA end position 
gttgattctg
Secondary structure (Cloverleaf model)
>At2010	Ala	TGC
                   a      Acta gttgattctg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          C A
                    T     A G C C C     A
        G A        A      | | | | |     A
      C     C T A G       T C G G G     C
      G     | | | |                 T T
      G     G A T C
        T A        G     AGGCC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGATCAGCGGTAGATCGCCTGCTTTGCAAGCAGGAGGCCTCGGGTTCAAACC
CCGACCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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