The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2011
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 271409
End posion on genome 271481
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
gtcctgatac
tRNA gene sequence 
GCCACTGTAGCTCAGTTGGTAGAGCAGCTGACTTGTAATCAGCAGGTCGGGGGATCGATG
CCCTCCAGTGGCTttt
Downstream region at tRNA end position 
tttgattgat
Secondary structure (Cloverleaf model)
>At2011	Thr	TGT
                   c      Tttt tttgattgat
                     G - C
                     C - G
                     C - G
                     A - T
                     C - G
                     T - A
                     G - C          G T
                    T     C T C C C     A
      T G A        A      | + | | |     G
    T       C T C G       G G G G G     C
    G       | | | |                 A T
    G       G A G C
      T A          A     AGGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCACTGTAGCTCAGTTGGTAGAGCAGCTGACTTGTAATCAGCAGGTCGGGGGATCGATG
CCCTCCAGTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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