The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2012
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 325114
End posion on genome 325186
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position
cgagttttag
tRNA gene sequence
GGGGCCGTGGGGTAGCTTGGTATCCTACGGGCTTTGGGAGCCTGAGACTCCGGTCCAAAT
CCGGACGGCCCCAtca
Downstream region at tRNA end position
ggttttagtt
Secondary structure (Cloverleaf model)
>At2012	Pro	TGG
                   g      Atca ggttttagtt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     A G G C C     A
      C G A        G      | | | | |     A
    T       T G G G       T C C G G     C
    T         | | +                 T C
    G       T C C T
      G T A        A     AGAC
                    C - G
                    G + T
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTGGGGTAGCTTGGTATCCTACGGGCTTTGGGAGCCTGAGACTCCGGTCCAAAT
CCGGACGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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