The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2013
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 451837
End posion on genome 451911
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
aacctatgtt
tRNA gene sequence 
GCTCCGGTGGTGTAGTCCGGACAAGCATATCGGCCTTTCGAGCCGACGACCTGGGTCCAA
ATCCCGGCCGGAGCAtca
Downstream region at tRNA end position 
cgtccacttc
Secondary structure (Cloverleaf model)
>At2013	Glu	TTC
                   t      Atca cgtccacttc
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      | + | | |     A
  C         T G T G       C T G G G     C
  G         + | | +                 T C
  G         G C A T
    A C A A        A     CGAC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTGGTGTAGTCCGGACAAGCATATCGGCCTTTCGAGCCGACGACCTGGGTCCAA
ATCCCGGCCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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