The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2014
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 507975
End posion on genome 508061
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
aagcatttgt
tRNA gene sequence 
GCGGAAGTAGTGTAGTCTGGCATCACAGGAGCTTCCCAAGCTCCTAACCCGGGTTCAAAT
CCCGGCTTCCGCAtac
Downstream region at tRNA end position 
tcgaattgag
Secondary structure (Cloverleaf model)
>At2014	Gly	CCC
                   t      Atac tcgaattgag
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C          T A
                    T     G G C C C     A
      T G A        A      | | | | |     A
    C       T G T G       C C G G G     C
    T         | | |                 T T
    G       T C A C
      G C A        A     TAAC
                    G - C
                    G - C
                    A - T
                    G - C
                    C - G
                  T       A
                  T       A *
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAAGTAGTGTAGTCTGGCATCACAGGAGCTTCCCAacttttagggaaaaAGCTCCTA
ACCCGGGTTCAAATCCCGGCTTCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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