The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2015
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 525553
End posion on genome 525633
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
agaagataaa
tRNA gene sequence 
GCCGCGGTGGCCCAGCGGTACGGCGCCAGACTTGAGATCTGGTTCCCTTGTGGATCGGGA
GTTCGAATCTCCCCCGCGGCGcat
Downstream region at tRNA end position 
tagctgccta
Secondary structure (Cloverleaf model)
>At2015	Ser	TGA
                   a      Gcat tagctgccta
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     C C C T C     A
        G A        G      | | | | |     G
      C     C C C G       G G G A G     C
      G       | | |                 T T
      G     C G G C
        T A        G     TTCCCTTGTGGATC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTGGCCCAGCGGTACGGCGCCAGACTTGAGATCTGGTTCCCTTGTGGATCGGGA
GTTCGAATCTCCCCCGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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