The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2016
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 551951
End posion on genome 552023
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position
gaacttaagt
tRNA gene sequence
GCGGGTGTGGTGTAGCCTGGCAACACGCGAGCTTGCCAAGCTCGTGCCTCGGGTTCAAAT
CCCGACATCCGCAtag
Downstream region at tRNA end position
tttacttata
Secondary structure (Cloverleaf model)
>At2016	Gly	GCC
                   t      Atag tttacttata
                     G - C
                     C - G
                     G - C
                     G - C
                     G + T
                     T - A
                     G - C          T A
                    T     A G C C C     A
      C G A        G      | | | | |     A
    C       T G T G       T C G G G     C
    T       | | | |                 T T
    G       A C A C
      G C A        G     TGCC
                    C - G
                    G - C
                    A - T
                    G - C
                    C - G
                  T       A
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGTGTGGTGTAGCCTGGCAACACGCGAGCTTGCCAAGCTCGTGCCTCGGGTTCAAAT
CCCGACATCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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