The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2017
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 567610
End posion on genome 567683
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
ttatctgtgt
tRNA gene sequence 
GCCGTCGTAGCTCAGCCTGGTAGAGCGCGTGCTTGGTAAGCACGAGGTCGCGGGTCCGAA
CCCCGTCGGCGGCTtgt
Downstream region at tRNA end position 
tcttcaaagg
Secondary structure (Cloverleaf model)
>At2017	Thr	GGT
                   t      Ttgt tcttcaaagg
                     G - C
                     C - G
                     C - G
                     G - C
                     T + G
                     C - G
                     G - C          C A
                    T     T G C C C     A
      C G A        A      + | | | |     G
    C       C T C G       G C G G G     C
    T       | | | |                 T C
    G       G A G C
      G T A        G     AGGTC
                    C - G
                    G - C
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTCGTAGCTCAGCCTGGTAGAGCGCGTGCTTGGTAAGCACGAGGTCGCGGGTCCGAA
CCCCGTCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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