The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2018
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 574121
End posion on genome 574193
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
tgcgtttact
tRNA gene sequence 
GGGGCCGTGGGGTAGCCTGGTATCCTTCCAGCTTCGGGAGCTGGAAACTCCGGTCCAAAT
CCGGACGGCCCCAtac
Downstream region at tRNA end position 
taatcatatt
Secondary structure (Cloverleaf model)
>At2018	Pro	CGG
                   t      Atac taatcatatt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     A G G C C     A
      C G A        G      | | | | |     A
    C       T G G G       T C C G G     C
    T         | | +                 T C
    G       T C C T
      G T A        T     AAAC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  T       A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTGGGGTAGCCTGGTATCCTTCCAGCTTCGGGAGCTGGAAACTCCGGTCCAAAT
CCGGACGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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