The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2019
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1118192
End posion on genome 1118276
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tgcggtggat
tRNA gene sequence 
GCGAGGGTAACTAAGCCAGGCCAACAGTGCAGGACTTAAGATCCTGTCCCGCAGGGGTTC
GCGGGTTCAAATCCCGCCCCTCGCAttg
Downstream region at tRNA end position 
ctaaattttg
Secondary structure (Cloverleaf model)
>At2019	Leu	TAA
                   t      Attg ctaaattttg
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    C C G A        A      | | | | |     A
  A         A T C A       G C G G G     C
  G           | | |                 T T
  G         C A G T
    C C A A        G     TCCCGCAGGGGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTAACTAAGCCAGGCCAACAGTGCAGGACTTAAGATCCTGTCCCGCAGGGGTTC
GCGGGTTCAAATCCCGCCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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