The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2020
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1139566
End posion on genome 1139650
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position
agtcaagagt
tRNA gene sequence
GCAGAGGTTGCCGAGTCAGGTCAAAGGCGGCAGACTCAAGATCTGCTTCCGTAGGGATTC
GCCGGTTCGAATCCGGCCCTCTGCAtcc
Downstream region at tRNA end position
aataggattt
Secondary structure (Cloverleaf model)
>At2020	Leu	CAA
                   t      Atcc aataggattt
                     G - C
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C G G C C     A
    C T G A        T      | | | | |     G
  A         G C C G       G C C G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TTCCGTAGGGATTC
                    G - C
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGAGGTTGCCGAGTCAGGTCAAAGGCGGCAGACTCAAGATCTGCTTCCGTAGGGATTC
GCCGGTTCGAATCCGGCCCTCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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