The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2021
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1183058
End posion on genome 1183129
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
cgtatagatg
tRNA gene sequence 
GCCGGGGTGGGGTAGTGGATATCCTTGGGGACTGTGGATCCCCGGACCCGGGTTCGATTC
CCGGTCCCGGCCcat
Downstream region at tRNA end position 
caaatttgtt
Secondary structure (Cloverleaf model)
>At2021	His	GTG
                   g      Ccat caaatttgtt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          T T
                    T     G G C C C     A
      T G A        G      | | | | |     G
    G       T G G G       C C G G G     C
    G         | | +                 T T
    A       T C C T
      T A          T     GGAC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGGGTAGTGGATATCCTTGGGGACTGTGGATCCCCGGACCCGGGTTCGATTC
CCGGTCCCGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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