The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2022
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1188104
End posion on genome 1188176
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
gttttcttaa
tRNA gene sequence 
GGGGCCGTGGGGTAGCTTGGTATCCTGCCAGCTTGGGGTGCTGGTGACTTGAGTTCAATT
CTCAACGGCCCCAtac
Downstream region at tRNA end position 
ttgtttacta
Secondary structure (Cloverleaf model)
>At2022	Pro	GGG
                   a      Atac ttgtttacta
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T T
                    T     A A C T C     A
      C G A        G      | | | | |     A
    T       T G G G       T T G A G     C
    T         | | +                 T T
    G       T C C T
      G T A        G     TGAC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  T       T
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTGGGGTAGCTTGGTATCCTGCCAGCTTGGGGTGCTGGTGACTTGAGTTCAATT
CTCAACGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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