The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2024
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1248634
End posion on genome 1248705
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
gcgattccac
tRNA gene sequence 
GGATAGGTGGCAGAGTGGTCATGCGTGGGACTGCAGATCCCATTTACTAGGGTTCAATTC
CCTACCTATCCTtaa
Downstream region at tRNA end position 
tgcaattaag
Secondary structure (Cloverleaf model)
>At2024	Cys	GCA
                   c      Ttaa tgcaattaag
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T
                     G - C
                     G - C          T T
                    T     A T C C C     A
        G A        G      | | | | |     A
      T     G A C G       T A G G G     C
      G       | | |                 T T
      G     A T G C
        T C        G     TTTAC
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGATAGGTGGCAGAGTGGTCATGCGTGGGACTGCAGATCCCATTTACTAGGGTTCAATTC
CCTACCTATCCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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