The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2025
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1440856
End posion on genome 1440995
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ctcctgtgtt
tRNA gene sequence 
GGGGACATGGGGTAATGGCATCCTGACGGGCTCCAGACCCGTAGATCTGGGTTCAACTCC
CAGTGTCCCCAtat
Downstream region at tRNA end position 
tttctttatc
Secondary structure (Cloverleaf model)
>At2025	Trp	CCA
                   t      Atat tttctttatc
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     A - T          T C
                    T     G A C C C     A
        A A        G      | | | | |     A
      T     T G G G       C T G G G     C
      G       | | +                 T T
      G     T C C T
        C A        G     AGAT
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGACATGGGGTAATGGCATCCTGACGGGCTCCAGtcaggaagtgattagaaacagggt
catctgatttaatgatgagtgactggaactatgatccaggaagagACCCGTAGATCTGGG
TTCAACTCCCAGTGTCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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