The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2026
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 1477812
End posion on genome 1477886
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position
tagccttaac
tRNA gene sequence
GGGCCCGTGGCCTAGCTAGGATAAGGCACCGTCCTTCTAAGTCGGGAATCGTGGGTCCAA
ATCCCACCGGGCCCGtat
Downstream region at tRNA end position
ataatctgtg
Secondary structure (Cloverleaf model)
>At2026	Arg	TCT
                   c      Gtat ataatctgtg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
    T C G A        G      | | | | |     A
  A         T C C G       G T G G G     C
  G         | | | |                 T C
  G         A G G C
    A T A          A     GAATC
                    C - G
                    C - G
                    G - C
                    T   T
                    C - G
                  C       A
                  T       A
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCCTAGCTAGGATAAGGCACCGTCCTTCTAAGTCGGGAATCGTGGGTCCAA
ATCCCACCGGGCCCG
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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