The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2029
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 135403
End posion on genome 135331
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
aacgctgtaa
tRNA gene sequence 
GCCGTGGTAGCTCAGTTGGGAGAGCGCCAGACTGAAGATCTGGAGGTCGCTGGTTCGATC
CCGGCCCACGGCAtat
Downstream region at tRNA end position 
attcataaat
Secondary structure (Cloverleaf model)
>At2029	Phe	GAA
                   a      Atat attcataaat
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A
                     G - C
                     G - C          C T
                    T     C G G C C     A
      T G A        A      | | + | |     G
    T       C T C G       G C T G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTGGTAGCTCAGTTGGGAGAGCGCCAGACTGAAGATCTGGAGGTCGCTGGTTCGATC
CCGGCCCACGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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