The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2030
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 226360
End posion on genome 226286
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
tacccctaaa
tRNA gene sequence 
GCTCCGGTGGTGTAGTCCGGCCAAGCATTAGGGACTCTCAATCCCCCGACTCGGGTCCAA
ATCCCGACCGGAGCActt
Downstream region at tRNA end position 
taaatctgat
Secondary structure (Cloverleaf model)
>At2030	Glu	CTC
                   a      Actt taaatctgat
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     A G C C C     A
    C T G A        G      | | | | |     A
  C         T G T G       T C G G G     C
  G         + | | +                 T C
  G         G C A T
    C C A A        T     CGAC
                    A   C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGGTGGTGTAGTCCGGCCAAGCATTAGGGACTCTCAATCCCCCGACTCGGGTCCAA
ATCCCGACCGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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