The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2031
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 261519
End posion on genome 261447
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
atagcgttgc
tRNA gene sequence 
GGGCTTGTGGTCCAGTGGCTACGACGTCTCCCTCACACGGAGAAGATCGCCGGTTCGAAT
CCGGCCAGGCCCAttc
Downstream region at tRNA end position 
cattaatggt
Secondary structure (Cloverleaf model)
>At2031	Val	CAC
                   c      Attc cattaatggt
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     T - A
                     G - C          T A
                    T     C G G C C     A
      T G A        G      | | | | |     G
    G       C C T G       G C C G G     C
    G         | | |                 T T
    C       C G A C
      T A          G     AGATC
                    T - A
                    C - G
                    T - A
                    C - G
                    C - G
                  C       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTTGTGGTCCAGTGGCTACGACGTCTCCCTCACACGGAGAAGATCGCCGGTTCGAAT
CCGGCCAGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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