The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2032
Genome IDBA000011
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma volcanium GSS1 [BA000011]
Start position on genome 291797
End posion on genome 291724
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
ctttcacagt
tRNA gene sequence 
GGGTCCGTAGCTTAGCTAGGTAGAGCGATGGACTCTTAATCCATAGGTCAGGGGTCCAAA
TCCCCTCGGACCCGtta
Downstream region at tRNA end position 
tattttgtgc
Secondary structure (Cloverleaf model)
>At2032	Lys	CTT
                   t      Gtta tattttgtgc
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     C - G
                     G - C          T A
                    T     T C C C C     A
      C G A        A      | | | | |     A
    T       T T C G       A G G G G     C
    A       + | | |                 T C
    G       G A G C
      G T A        G     AGGTC
                    A - T
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTCCGTAGCTTAGCTAGGTAGAGCGATGGACTCTTAATCCATAGGTCAGGGGTCCAAA
TCCCCTCGGACCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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